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Environnement de travail#

Comment travailler sur le serveur ?#

Protocole ssh#

  • En se connectant sur un serveur linux distant de son ordinateur via le protocole ssh

HPC South Green
=> itrop (IRD) bioinfo-inter.ird.fr

protocole sftp#

  • En se connectant sur un serveur linux distant de son ordinateur via le protocole sftp

HPC South Green
=> itrop (IRD) bioinfo-nas.ird.fr

Practice 1 : Get Connecting on a linux server by ssh#

In mobaXterm:

  1. Click the session button, then click SSH.

    • In the remote host text box, type: HOSTNAME (see table below)
    • Check the specify username box and enter your user name

  2. In the console, enter the password when prompted. Once you are successfully logged in, you will use this console for the rest of the lecture.

Cluster HPC hostname
IRD HPC bioinfo-inter.ird.fr
  • Connect on the HPC

Practice 2 : Preparing working environnement#

  • Move into the directory /scratch2
  • Create a working directory such as Formation-X (X corresponds to your login id/number)
  • Move into this directory just created and check the current/working directory just by looking the prompt