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Bioinformatics Workshop on Tools for Reproducible Research
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    • Tutorials
    • Cheat sheet
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    training_reproducible_research
    • Home
      • Introduction
      • Roundtable Introduce Yourself
      • Introduction Reproducible Research
      • Data Management
      • Ice breaker session
        • Introduction
        • Setup
        • Creating a git repository
        • Committing changes
        • Undoing and recovering
        • Ignoring files
        • Branching and merging
        • Tagging commits
        • Working remotly
        • Conflict
        • Extra material
        • Introduction
        • Setup
        • The basics
        • Projects
        • Extra material
        • Introduction
          • Introduction
          • Setup
          • The basics
          • Visualising workflow
          • The MRSA Workflow
          • Parameters
          • Logs
          • Temporary files
          • Targets
          • Shadow rules
          • Generalizing workflows
          • Extra material
          • Introduction
          • Setup
          • Getting started with nf-core
          • The basics
          • Executing workflows
          • Working with process
          • Workflow configuration
          • Optmising the MRSA workflow
          • Extra material
        • Introduction
        • Setup
        • The basics
        • Building a Docker image
        • Managing containers
        • Distributing your images
        • Packaging the case study
        • Singularity
        • Extra material
        • Context
        • Markdown
        • Introduction
        • Setup
        • The basics
        • Text
        • Code chunks
        • The YAML header
        • Rendering
        • The MRSA case study
        • Extra materiel
        • Introduction
        • Setup
        • The basics
        • Magics
        • Plotting
        • Widgets
        • Extensions
        • Converting notebooks
        • The MRSA case study
        • Extra material
        • Introduction
        • Setup
        • The basics
        • Rendering
        • Extensions
        • The MRSA case study
        • Comparison
        • Extra material
        • Review
        • Good praticies
        • And now ?
        • To end on a high note !
      • Take down
      • Final word
      • Bash
      • Git
      • Git official
      • Conda
      • Notebook
      • Docker
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    Ask a question

    We have set up a slido workplace where you can ask questions and vote for others' questions at any time. We will try to take the time to answer these questions along the training.

    The slido for the training is also accessible here : https://app.sli.do/event/qD5C3sKAG2Q2bN2JMXsZZA/live/questions

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