|
This course introduces the 2 commonly used workflow managers in the South Green Bioformatics platform, both in a theoretical and practical way, with hands-on practice sessions. It will help you to quickly develop and run your own pipelines using these tools through an graphical user or command-line interface. |
TOGGLe, a flexible framework for easily building complex workflows and performing robust large-scale NGS analyses Christine Tranchant-Dubreuil, Sebastien Ravel, Cecile Monat, Gautier Sarah, Abdoulaye Di- allo, Laura Helou, Alexis Dereeper, Ndomassi Tando, Julie Orjuela-Bouniol, Francois Sabot. bioRxiv https: //www.biorxiv.org/content/early/2018/01/10/245480.
Prerequisites
Prior knowledge of workflow managers not necessary Basic knowledge of Linux (Linux for dummies required) - TOGGLe practical
Program
- Why using a workflow manager to analyse data ?
- How to perform an analysis ?
- How to create your own workflow ?
- How to execute it?
- Use case
Learning objectives
- Explaining what Workflow Managers are,
in which way they differ from each other. - How you can use them in your research.
- Creating your own workflow
- Analysing your NGS data with Galaxy and TOGGLe
Training material
Instructors
- Alexis Dereeper (AD) - alexis.dereeper@ird.fr
- Sebastien Ravel (SR) - sebastien.ravel@cirad.fr
- Julie Orjuela (JO) - julie.orjuela@ird.fr
- Christine Tranchant (CT) - christine.tranchant@ird.fr
Trainings
| Date | Location | Topics | Participants | Instructors | Links | Units |
| 2019 | Montpellier, France | TOGGLe | 15 | AD, SR, CT, JO | UMR DIADE, IPME, MIVEGEC, INTERTRYP, AGAP | |
| 2018 | Montpellier, France | TOGGLe | 20 | AD, SR, CT | UMR DIADE, IPME, MIVEGEC, INTERTRYP, AGAP | |
| 2017 | Montpellier, France | TOGGLe | 20 | CT, AD | UMR DIADE, IPME, MIVEGEC, INTERTRYP |