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Linux For Dummies


This course offers an introduction to work with Linux. We will describe the Linux environment, the first linux commands so participants can start to utilize command-line tools and feel comfortablei using bioinformatics softwares through a linux terminal.

Prerequisites

No experience required

Program

  • Connecting to a distant HPC
  • Navigating through a Unix file system
  • Creating and deleting files
  • Manipuling and filtering file text
  • Basics searching for text within a file

Learning objectives

After this course, participants should be able to:
  • Connect to a Unix / Linux system
  • Manipulate files and directories within the Linux system
  • Work with text files
  • Run programs from the command-line

Training material

Instructors

  • Clement Agret - clement.agret@cirad.fr (UMR AGAP)
  • Alice Boizet - alice.boizet@cirad.fr (UMR AGAP)
  • Florentin Constancias - florentin.constancias@cirad.fr (UMR Qualisud)
  • Alexis Dereeper - alexis.dereeper@ird.fr (UMR PHIM)
  • Bruno Granouillac - bruno.granouillac@ird.fr (UMR TransVIH-MI/MIVEGEC)
  • Valérie Noël - valerie.noel@ird.fr (UMR MIVEGEC)
  • Sebastien Ravel - sebastien.ravel@cirad.fr (UMR PHIM)
  • François Sabot francois.sabot@ird.fr (UMR DIADE)
  • Gautier Sarah - gautier.sarah@cirad.fr (UMR AGAP)
  • Guilhem Sempéré - guilhem.sempere@cirad.fr (UMR INTERTRYP)
  • Marilyne Summo - marilyne.summo@cirad.fr (UMR AGAP)
  • Ndomassi Tando - ndomassi.tando@ird.fr (UMR DIADE)
  • Christine Tranchant - christine.tranchant@ird.fr (UMR DIADE)

Trainings

Date Location Topics Parrticipants Instructors Units
2022 Montpellier, France Linux For Dummies 22 G. Sempéré, N. Tando, A. Boizet, B. Granouillac, C. Tranchant UMR AGAP, DIADE, PHIM, MIVEGEC, transVIH-MI, bioversity
2019 Montpellier, France Linux For Dummies 20 C. Tranchant, N. Tando, G. Sempéré, F. Constancias, V. Noël UMR AGAP, BGPI, DIADE, IPME, Qualisud, MIVEGEC
2018 Montpellier, France Linux For Dummies 24 G. Sarah, C. Tranchant, C. Agret, Marilyne Summo UMR AGAP
2018 Montpellier, France Linux For Dummies 20 C. Tranchant, N. Tando, B. Granouillac, F. Sabot, G. Sarah UMR DIADE, IPME, MIVEGEC, transVIH-MI
2017 Dakar, Senegal Linux & Perl 20 N. Tando, C. Tranchant, F. Sabot IRD, Bel Air Campus
2016 Ouagadougou, Burkina Bioinformatics applied to genomics 20 C. Tranchant, A. Dereeper IRD
2014 Sao Paulo, Brazil Bioinformatics applied to genomics 20 C. Tranchant University of Sao Paulo
2014 Dakar, Senegal Bioinformatics applied to genomics 20 C. Tranchant, A. Dereeper IRD, Bel Air Campus
2013 Dakar, Senegal Bioinformatics applied to genomics 20 C. Tranchant, A. Dereeper, B. Granouillac University of Dakar (UCAD)
2013 Montpellier, France Bioinformatics applied to genomics 30 C. Tranchant, B. Granouillac UMR DIADE, IMPE, MIVEGEC, LSTM
2012 Ouagadougou, Burkina Bioinformatics applied to genomics 20 B. Granouillac, A. Dereeper IRD
2012 Montpellier, France Bioinformatics applied to genomics 30 C. Tranchant, B. Granouillac UMR DIADE, IMPE, MIVEGEC, LSTM
2011 Montpellier, France Bioinformatics applied to genomics 30 C. Tranchant, B. Granouillac UMR DIADE, IMPE, MIVEGEC, LSTM