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This course introduces TOGGLe (Toolbox for Generic NGS Analyses), a framework to quickly build pipelines and to perform large-scale NGS analysis through an easy and user-friendly approach. This tools is developed by the Sout Green platform. |
TOGGLe, a flexible framework for easily building complex workflows and performing robust large-scale NGS analyses Christine Tranchant-Dubreuil, Sebastien Ravel, Cecile Monat, Gautier Sarah, Abdoulaye Di- allo, Laura Helou, Alexis Dereeper, Ndomassi Tando, Julie Orjuela-Bouniol, Francois Sabot. bioRxiv https: //www.biorxiv.org/content/early/2018/01/10/245480.
Prerequisites
Basic knowledge of Linux (Linux for dummies required)
Program
- Why using TOGGLe to analyse NGS data?
- How to perform an analysis with TOGGLe?
- Creating your own workflow with a simple configuration file
- How to execute your own workflow using the command line interface?
- Use case
Learning objectives
- Creating your own workflow
- Analysing your NGS data with TOGGLe
Instructors
- Christine Tranchant (CT) - christine.tranchant@ird.fr
- Sebastien Ravel (SR) - sebastien.ravel@cirad.fr
Trainings
| Date | Location | Topics | Parrticipants | Instructors | Links | Units |
| 2017 | Montpellier, France | TOGGLe | 20 | CT, SR | UMR DIADE, IMPE, MIVEGEC, INTERTRYP |