rapgreen

Class TreeClustering

java.lang.Object

rapgreen.TreeClustering

public class TreeClustering
extends java.lang.Object

Field Summary

Fields

Modifier and Type	Field and Description
static java.io.File	alignment Input alignment
static java.lang.String	closer Closer option
static java.io.File	dictionary Dictionnary
static java.lang.String	label
static double	length
static java.io.File	outputFile Output cluster file
static java.io.File	sampleFile
static double	threshold Cutting threshold
static boolean	toCut
static java.io.File	treeFile Input tree file

Constructor Summary

Constructors

Constructor and Description
TreeClustering()

Method Summary

Methods

Modifier and Type	Method and Description
static void	main(java.lang.String[] args)
static Tree	mostRepresentative(Tree tree)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

treeFile

public static java.io.File treeFile

Input tree file

outputFile

public static java.io.File outputFile

Output cluster file

threshold

public static double threshold

Cutting threshold

dictionary

public static java.io.File dictionary

Dictionnary

alignment

public static java.io.File alignment

Input alignment

sampleFile

public static java.io.File sampleFile

closer

public static java.lang.String closer

Closer option

label

public static java.lang.String label

length

public static double length

toCut

public static boolean toCut

Constructor Detail

TreeClustering

public TreeClustering()

Method Detail

main

public static void main(java.lang.String[] args)

mostRepresentative

public static Tree mostRepresentative(Tree tree)