rapgreen

Class TreeColoring

java.lang.Object

rapgreen.TreeColoring

public class TreeColoring
extends java.lang.Object

Field Summary

Fields

Modifier and Type	Field and Description
static java.util.Hashtable	codingForMeta
static java.util.Hashtable	codingForMetaAlt
static java.io.File	duplicationsFile Duplications in CSV format as Orthofinder format
static java.io.File	input Input species file
static java.util.Vector	lines
static java.io.File	nexml Input species file
static java.io.File	output Output rootings file
static java.io.File	species Input species file

Constructor Summary

Constructors

Constructor and Description
TreeColoring()

Method Summary

Methods

Modifier and Type	Method and Description
static void	color(Tree g, Tree s)
static void	main(java.lang.String[] args)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

input

public static java.io.File input

Input species file

nexml

public static java.io.File nexml

Input species file

species

public static java.io.File species

Input species file

duplicationsFile

public static java.io.File duplicationsFile

Duplications in CSV format as Orthofinder format

output

public static java.io.File output

Output rootings file

codingForMeta

public static java.util.Hashtable codingForMeta

codingForMetaAlt

public static java.util.Hashtable codingForMetaAlt

lines

public static java.util.Vector lines

Constructor Detail

TreeColoring

public TreeColoring()

Method Detail

main

public static void main(java.lang.String[] args)

color

public static void color(Tree g,
         Tree s)