| Class | Description |
|---|---|
| BuildSpeciesTree | |
| PhylogeneticMapping | |
| RapGreen |
Entry point of RapGreen program
|
| ReconciliationDatabaseDaemon |
Executable program to manage reconciliation database (add trees ...)
|
| Rootings | |
| SpeciesDictionary |
Species dictionary.
|
| Temp | |
| Tree |
Global class of tree management.
|
| TreeClustering | |
| TreeColoring | |
| TreeFilter | |
| TreeReader |
Tree file reading class.
|
| TreeReconciler |
Tree reconciliation class.
|
| TreeScoring |
Tree scoring class.
|
| TreeStats | |
| TreeWriter |
Tree file writing class.
|